SP01: Global and targeted proteomics in cell death

Project Leader: Julia Mergner

Important aspects of cellular programs like cell death are executed through changes in protein abundance levels, post-translational modification (PTM) status or protein-protein interactions, which singly or in combination modulate the molecular network of a cell. Knowledge about this vast functional diversity requires direct measurements at the protein level to generate additional or complementary biological information to measurements available through genomic and transcriptomic technologies. Mass spectrometry-based proteomics has emerged here as a powerful technique to enable unbiased system-wide studies of the global proteome as well as targeted elucidation of specific protein and pathway characteristics. Therefore, this central project aims to support research within numerous subprojects of the TRR 353 by providing the necessary scientific expertise related to state-of-the-art mass spectrometry-based proteomics, together with support for project planning, data generation and interpretation as well as the training of young scientists.


Teaching and Education

Scientific Workshop: ProteomicsIRTG Qualification program

18-19 April, 2024

TranslaTUM, Einsteinstraße 25, 81675 München

Proteomics analyses often contain identification and quantification information for thousands of proteins, so that data analysis and visualization can become challenging. In this workshop, we aim to introduce our participants to the basic principles of mass spectrometry-based proteomics and proteomics data analysis. Attendees will gain hands-on experience evaluating proteomics data based on our guided tutorial and test data set. Please be aware that we will work with the Perseus software, which requires a Windows operating system.

(https://cox-labs.github.io/coxdocs/perseus_download_guide.html).